Mar 6, 2021 - 2 minute read - Personal

February Quick Update

I haven’t posted anything in February. It was the busiest month I ever had. Our baby girl decided to arrive earlier than expected. Due to the pandemic, we decided to manage baby things on our own, without our parents. It’s fun, but for the first time parents like us, it’s not easy. The most difficult part is baby can’t talk and exactly tell us what she wants yet. So we have to decipher her crying. Decoding her crying is like solving a puzzle. Is the diper wet, or poopy? Is she hungry? Or too full and needs to burp? But we just burped few mins ago. Is she too cold or too warm? Or just plain bored? The first few weeks I took a brute force approach and tried everything to soothe her. It worked but it was very inefficient (and exhausting). After a couple of more weeks, we got a hang of it and somewhat able to understand what she wants. (or she has given up on our parenting :)). The interesting thing about parenting is that everyone else has an opinion, and it usually comes down to how we are doing it wrong. ;) I learned to ignore it for the most part. I think nobody knows what they are doing, so it’s just figuring out on the go.

Anyways, here is a funny anecdote. We were visiting the doctor for regular checkups over the last year. On our first visit to the hospital, the nurse told us to ‘go downstairs to the lab’ for the blood checkup. Downstairs I noticed something interesting. There was no lab to be found. At least not easily. There were at least 4 other offices, each of them telling me that ‘it’s not a lab’. The notice on one door told me that the lab was down the hall. But the Y shaped hallway had 3 corners to go.

After walking across all the hallways on that floor for 8-10 minutes, we finally located the lab in one remote corner. I guess we were just unlucky to pick the wrong hallways first. This bad ‘UX’ could’ve been easily avoided by simply putting a small arrow in the direction of the lab.

Whenever I am near the hospital, I feel I should go inside the building and put an arrow to show where the lab is.

Jan 23, 2021 - 5 minute read - Programming

Using Epic's FHIR APIs in Mule 4

Introduction

FHIR (Fast Healthcare Interoperability Resources) is a new and emerging standard for interoperability in healthcare IT. Unlike the ancient HL7v2 standard, FHIR is open, extensible, and composable. It supports modern web standards like JSON, XML, HTTP(!), and Turtle. It also defines different data exchange methods like RESTful API, messaging, services, documents, and persistent storage. Best of all the FHIR documentation is outstanding: There is detail documentation for every type of resource, with lots of examples. Enough detail for anyone to create a compliant implementation. All of the data types like dates and times, terminologies, identifiers, references, numeric values, extensions are documented in detail, including how to read and write them. It’s probably one of the best documented and well thought out APIs I have worked with.

Epic made their FHIR APIs available on https://fhir.epic.com/. In this post, we will discuss using Epic’s FHIR APIs in Mule 4

Prerequisites

You will need an Epic developer account. You can get one for free by signing up here. I have used Anypoint Studio 7.7 for Mule app.

Configuration

Certificate setup for JWS

We will use SMART Backend Services approach described here which uses signed JWT to get the access token.

Generate a new public-private key pair, and get the certificate(s) in appropriate format

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# generate a new public-private key pair
openssl genrsa -out Anypoint_Mulesoft.pem 2048  

# export the public key to a base64 encoded X.509 certificate
openssl req -new -x509 -key Anypoint_Mulesoft.pem -out Anypoint_PublicKey.pem -subj '/CN=Anypoint' -days 365

# export the keystore in pkcs12
openssl pkcs12 -export -in Anypoint_PublicKey.pem -inkey Anypoint_Mulesoft.pem -out Anypoint_Keystore.p12

Create an app in Epic

Login to https://fhir.epic.com/ and click on ‘Build Apps’
Click on ‘Create’ and enter your app details as follows. Make sure to select the Application Audience as ‘Backend Systems’. For Sandbox JWT signing public key, upload the public key store (Anypoint_PublicKey.pem) file generated in the previous step. Click on save.
You should see the Client ID and Non-Production Client ID for your app. Select the SMART on FHIR version as R4, enter the summary, accept the terms of usage and click on ‘Save & Ready for Sandbox’.

In my experience it usually takes a couple of hours for your app to be usable in Epic. It took me ~2 hours for my app to be usable

Mule application details

Create a new Mule application, and copy the pkcs12 formatted keystore (Anypoint_Keystore.p12) created earlier, in the src/main/resources folder.

To generate a signed JWT (JWS), we will use Java JWT library. In the pom.xml of your Mule application, include the following dependencies. (I have included Apache log4j dependencies, these are optional).

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<dependency>
    <groupId>org.apache.logging.log4j</groupId>
    <artifactId>log4j-api</artifactId>
    <version>2.14.0</version>
</dependency>
<dependency>
    <groupId>org.apache.logging.log4j</groupId>
    <artifactId>log4j-core</artifactId>
    <version>2.14.0</version>
</dependency>
<dependency>
    <groupId>io.jsonwebtoken</groupId>
    <artifactId>jjwt-api</artifactId>
    <version>0.11.2</version>
</dependency>
<dependency>
    <groupId>io.jsonwebtoken</groupId>
    <artifactId>jjwt-impl</artifactId>
    <version>0.11.2</version>
</dependency>
<dependency>
    <groupId>io.jsonwebtoken</groupId>
    <artifactId>jjwt-jackson</artifactId> 
    <version>0.11.2</version>
</dependency>
<dependency>
    <groupId>org.bouncycastle</groupId>
    <artifactId>bcprov-jdk15on</artifactId>
    <version>1.65</version>
    <type>jar</type>
</dependency>

In Mule application’s src/main/java folder, create a new Java package com.dhimate.demo, class JWTProvider and use following code snippet to generate signed JWT.

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package com.dhimate.demo;

import io.jsonwebtoken.Jwts; 

import java.io.File;
import java.io.FileInputStream;
import java.net.URL;
import java.security.KeyStore;
import java.security.PrivateKey;
import java.util.Date;
import java.util.Enumeration;
import java.util.UUID;
import java.util.concurrent.TimeUnit;
import org.apache.logging.log4j.LogManager;
import org.apache.logging.log4j.Logger;


public class JWTProvider {
//	private static final String PRIVATE_KEY_FILE_RSA = "Anypoint_Keystore.p12";
//	private static final String PRIVATE_KEY_PASSWORD = "CHANGEIT";
//	private static final String EPIC_CLIENT_ID = "86121d55-247e-4a0b-b3c0-6fa28c995f72";
//	private static final String EPIC_FHIR_URL = "https://fhir.epic.com/interconnect-fhir-oauth/oauth2/token";
	
	private static final Logger logger = LogManager.getLogger("JWTProvider");
	public static String getToken(String PRIVATE_KEY_FILE_RSA, 
                                String PRIVATE_KEY_PASSWORD, 
                                String EPIC_CLIENT_ID, 
                                String EPIC_FHIR_URL) throws Exception {
		
		logger.info("Generating JWS token");
		
		String jws = Jwts
				.builder()
				.setHeaderParam("alg", "RS384")
				.setHeaderParam("typ", "JWT")
				.setIssuer(EPIC_CLIENT_ID)
				.setSubject(EPIC_CLIENT_ID)
				.setAudience(EPIC_FHIR_URL)
				.setId(UUID.randomUUID().toString())
				.setExpiration(new Date(System.currentTimeMillis() + TimeUnit.MINUTES.toMillis(5)))
				.signWith(getKey(PRIVATE_KEY_FILE_RSA, PRIVATE_KEY_PASSWORD))
				.compact();
		
		return (jws);
	}

	private static PrivateKey getKey(String PRIVATE_KEY_FILE_RSA, 
                                    String PRIVATE_KEY_PASSWORD) throws Exception {
		
		KeyStore keystore = KeyStore.getInstance("PKCS12");
		URL resource = JWTProvider.class.getClassLoader().getResource(PRIVATE_KEY_FILE_RSA);
		FileInputStream is = new FileInputStream(new File(resource.toURI()));
		
		keystore.load(is, PRIVATE_KEY_PASSWORD.toCharArray());
		Enumeration<String> aliases = keystore.aliases();
		String keyAlias = "";
		
		while (aliases.hasMoreElements()) {
			keyAlias = (String) aliases.nextElement();
		}

		PrivateKey key = (PrivateKey) keystore.getKey(keyAlias, PRIVATE_KEY_PASSWORD.toCharArray());
		return (key);
	}
}
 

Your Mule application should look like this.

In Mule application’s src/main/java folder, create a new Java package com.dhimate.demo, class JWTProvider and use the following code snippet to generate signed JWT.
Calling Epic’s FHIR APIs is a two-step process.

In the first step we need to get the access token using the signed JWT token
In the second step we will use the access token received in the step above to access FHIR resource

Let’s look at the configuration of important components

Generate signed JWS token using Invoke Static component
Prepare request payload to get access token
Get the access token
Call FHIR API to get the data

Once this is done, we can add a simple HTTP listener and connect our flow to it to get the data from Epic’s FHIR API. Epic has provided test data in the sandbox. Let’s use it to search for a patient record.

Yogesh Dhimate

Notes to Myself